PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016509241.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 500aa    MW: 53681.4 Da    PI: 8.1808
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016509241.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-055880123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C++C+k F r  nL+ H r H
  XP_016509241.1 58 FVCEICNKGFQRDQNLQLHRRGH 80
                    89*******************88 PP

2zf-C2H216.72e-05134156123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC+ C+k +  +s+ k H++t+
  XP_016509241.1 134 FKCERCTKKYAVQSDWKAHMKTC 156
                     89*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.02E-75780No hitNo description
Gene3DG3DSA:3.30.160.601.6E-55780IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0175880IPR015880Zinc finger, C2H2-like
PfamPF121718.0E-55880IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.9495880IPR007087Zinc finger, C2H2
PROSITE patternPS0002806080IPR007087Zinc finger, C2H2
SMARTSM0035522099129IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.6E-5122155IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.02E-7129155No hitNo description
SMARTSM0035563134154IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MAEMENSSSM TVAGSSLEET ITQQNFPVKK KRNLPGNPDP EAEVIALSPK TLMATNRFVC  60
EICNKGFQRD QNLQLHRRGH NLPWKLRQRT SKEVKKRVYV CPEAMCVHHD PSRALGDLTG  120
IKKHFCRKHG EKKFKCERCT KKYAVQSDWK AHMKTCGTRE YRCDCGTLFS RRDSFITHRA  180
FCDALAQESA RAQPMGITNT EENLKVDEAV TSSSSPPPQP LTPSTGVLSP VLSIQSSELP  240
ADNQNQAGVQ LQAAQGTTPV STTTVTATTI STTASITGPG SSKVFASVFP PSTTLAGHPH  300
SSYSDILCAI GPEQISPIEP MSLSLSSSFY LSANDGSTLF QDHTGHSQHY GSTTQPVLSA  360
TALLQKAAQM GATSSNNSFL RGLGLAMSST SASDNISRVK LENNVELPGL GIQLPSNGPS  420
GRWTDLMMGP SHESMMFGNK PPTLDFLGLG NDANATSSNG FSALLSSMDG GFGVATTSYG  480
GVATRGEAWD GHSDRKPSML
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016509241.10.0PREDICTED: protein indeterminate-domain 2-like isoform X1
SwissprotQ9LVQ71e-135IDD1_ARATH; Protein indeterminate-domain 1
TrEMBLM1A2F20.0M1A2F2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000131740.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-113indeterminate(ID)-domain 2